News

Dr. Laura Lukes, Assistant Professor in the Department of Earth, Ocean and Atmospheric Sciences, has been honored with the Outstanding Paper Award 2025 selected by the Journal of Geoscience Education, the leading international journal for research on how geoscience is taught and learned. 

The award-winning article, co-authored by Dr. Lukes, is titled The geoscience education research (GER) community of practice: a brief history and implications from a needs assessment survey. With more than 1,000 views as of August 2025, it is already making a significant impact.

The article is a 10-year follow up to a landmark 2015 paper led by Dr. Lukes, Creating a community of practice around geoscience education research: NAGT-GER, which defined geoscience education research (GER) and its community of practice in discipline-based education research (DBER). 

The new study examines how the GER community has grown over the past decade since the founding of the GER Division of the National Association of Geoscience Teachers (NAGT). Drawing on survey responses from 107 GER community members, the research identifies where the community is and what it needs to grow. Importantly, it fills in gaps from the foundational disciplinary DBER Report and helps establish the status and future directions of geoscience DBER in advance of the upcoming “Status of the Field of Discipline-Based Education Research” workshop, organized by the US National Academies of Sciences and scheduled in November 2025.

By receiving this award, Dr. Lukes and her co-authors have not only contributed to the ‘advancement of the discipline of geoscience education’ but also provided an important resource to represent geoscience education in the broader DBER conversation.

An international research team identified the cause of the devastating sea star wasting disease (SSWD) that has wiped out 90% of sunflower sea stars (Pycnopodia helianthoides) over the past decade. The culprit: Vibrio pectenicida strain FHCF-3.

The discovery was recently published in Nature Ecology and Evolution (NEE), with the draft genome of V. pectenicida FHCF-3 reported in Microbiology Resource Announcements (MRA).

This breakthrough was made possible through a multi-institutional collaboration involving researchers from the University of British Columbia (UBC), the Hakai Institute, the University of Washington, Washington Department of Fish and Wildlife, the U.S. Geological Survey, the University of Vermont, and Cornell University.

“It’s really a team effort that pulled this together,” said Curtis A. Suttle, one of the leaders of the project, and Professor and Principal Investigator of Aquatic Microbiology & Virology Lab at the Department of Earth Ocean and Atmospheric Sciences (EOAS) at UBC. Key contributors from the Suttle Lab included: Melanie B. Prentice (Research Associate), Amy M. Chan (Research Scientist), Kevin X. Zhong (Research Associate), Jan F. Finke (Research Associate), Katherine M. Davis (Postdoctoral Researcher), and Yasmine Gouin (Undergraduate Research Assistant).

A Decade of Destruction

Since 2013, SSWD has caused the deaths of billions of sea stars from Mexico to Alaska. It begins with lesions and progresses rapidly, “melting” sea star tissues in about two weeks. “Losing a sea star goes far beyond the loss of that single species,” said Melanie B. Prentice, first author of the NEE study, Research Associate at EOAS and Hakai. “In the absence of sunflower stars, sea urchin populations increase, which means the loss of kelp forests, and that has broad implications for all the other marine species and humans that rely on them.”

Wasting sunflower sea star off Calvert Island, British Columbia, in 2015. Credit: Grant Callegari, Hakai Institute

Urchin barren in Hakai Pass in 2019. The decline of sunflower sea stars has led to proliferation of urchins and a widespread loss of kelp. Credit: Grant Callegari, Hakai Institute

Melanie B. Prentice (right) and Grace A. Crandall in the U.S. Geological Survey’s Marrowstone Marine Field Station. Credit: Bennett Whitnell, Hakai Institute

Finding the Culprit

The team compared healthy sea stars with those exposed to SSWD through contaminated water, infected tissue or coelomic fluid—sea star “blood.” “When we looked at the coelomic fluid of exposed and healthy sea stars, there was just one thing different: Vibrio,” said Alyssa M. Gehman, senior author of the NEE study, an Adjunct Professor at UBC’s Institute for the Oceans and Fisheries and a marine disease ecologist at the Hakai Institute. “We all had chills. We thought, ‘That’s it. We have it. That’s what causes wasting.’”

Alyssa M. Gehman checking on an adult sunflower sea star in the Marrowstone Marine Field Station. Credit: Kristina Blanch, Hakai Institute

From there, EOAS Research Scientist Amy M. Chan established pure cultures of V. pectenicida FHCF-3 from the coelomic fluid of sick sea stars. When injected into healthy sea stars, all developed symptoms and died within days, conclusively proving the role of the bacterium in SSWD. “Using DNA sequencing, we saw there was a huge signal of a particular bacterium. This was our prime suspect to isolate. When I did, I saw basically only one kind of bacteria growing on the plates and thought, ‘This has got to be it,’” said Amy. 

The isolation of V. pectenicida FHCF-3 is “a really, really big finding”, added Curtis in an interview with CBC. “Many people have been looking at this for more than a decade, and have been unable to figure out what is it that’s decimating the sea star population.” 

Amy M. Chan comparing bacteria cultures from a sick versus a healthy sea star. The culture from the sick sea star (right) contains V. pectenicida. Credit: Toby Hall, Hakai Institute

Delving into the Genome

Building on the isolation of V. pectenicida FHCF-3, Kevin X. Zhong, first author of the MRA study and EOAS Research Associate, led the genome analysis of the bacterium. V. pectenicida FHCF-3 was found to have the genetic potential to produce aerolysin-like toxins, which may disrupt cellular membranes and drive the disease process. 

“The complete genome of V. pectenicida strain FHCF-3 is a valuable resource,” said Kevin. “It provides a detailed map of the bacterium’s genetic blueprint, offering clues about how it might cause disease and guiding future research to detect, prevent, and control SSWD.”

Kevin X. Zhong in the Aquatic Microbiology & Virology Lab (Suttle Lab) at UBC. Credit: Zhe Cai

Looking Forward

The researchers hope the discovery will pave the way for recovery strategies for sea stars and the ecosystems they support. “Now that we’ve identified the disease-causing agent, we can start looking at how to mitigate the impacts of this epidemic,” said Melanie.

Watch more interviews with the research team via the Hakai Institute, The Canadian Press, Global News, CBC News (here and here)

Read more coverage in: UBC News, Science, Nature Research Highlights, The Tula Foundation, USGS, CBC News, National Post, Global News, The Globe and Mail, The Conversation, Vancouver Sun, Glacier Media (via North Shore News, Richmond News, Vancouver is Awesome, Pique NewsMagazine, Times Colonist, Squamish Chief, Business in Vancouver (BIV), Bowen Island Undercurrent, Powell River Peak, and Sechelt / Gibsons Coast Reporter), The New York Times, The Washington Post, Discover Magazine, Los Angeles Times, USNews, NBC, CBS, ABC, 中国科学报, CNN Brazil, The Guardian, The Independent,  Sky News, Natural History Museum.

Follow news releases on this discovery here: https://www.nature.com/articles/s41559-025-02797-2/metrics 

Read the full article via UBC News: New mega RNA virus may hold the key to mass oyster die-offs.

Scientists have identified a previously undocumented virus, Pacific Oyster Nidovirus 1 (PONV1), associated with farmed Pacific oysters during a mass die-off in B.C., Canada. This finding, published in Proceedings of the National Academy of Sciences, is remarkable because PONV1 has an extraordinarily large genome of 64 kilobases (kb) – making it one of the largest RNA virus genomes ever recorded. 

Pacific oysters are the most widely farmed shellfish worldwide. As the primary shellfish species cultivated in B.C., it has an estimated value of $16 million in 2023. However, they are increasingly affected by mass-mortality events of unknown cause. In 2020, researchers collected 33 oysters from two farms in B.C. and 26 wild oysters from 10 nearby sites. PONV1 was detected in 20 of the dead or dying farmed oysters but was absent in healthy wild oysters, indicating a strong link between the virus and oyster mortality. By interrogating global genetic databases, researchers also found close relatives of PONV1 in Pacific oysters from Europe and Asia, indicating that this group of viruses are globally widespread.

Kevin (Xu) Zhong. Credit: Zhe Cai

Most RNA viruses have small genomes, typically below 30 kb, but PONV1 has a genome size of 64 kb. “The enormous genome of this virus makes it particularly fascinating as it pushes the known boundaries of how big RNA virus genomes can get,” said Dr. Zhong, first author of the study and Research Associate at the Department of Earth, Ocean and Atmospheric Sciences (EOAS) at UBC. “A larger genome may allow the virus to encode more genes or protein domains, potentially expanding or enhancing its ability to interact with hosts. This discovery offers a rare window into the possible evolutionary mechanisms that enable genome expansion in RNA viruses.”

Collecting oysters in a pot. Credit: Amy M. Chan

Farmed oysters with PONV1. Credit: Amy M. Chan

PONV1 and its relatives appear to infect only oysters, so humans are not at risk from contracting the virus, said Dr. Suttle, senior author and Professor at EOAS. “This research is not a cause for alarm. Rather, this is a meaningful step forward in advancing our understanding of oyster health and supporting the long-term sustainability of shellfish aquaculture.”

Curtis Suttle looking at water samples. Credit: Amy M. Chan

Amy Chan (Research Scientist, Suttle Lab) sampling an oyster bed. Credit: Kristi Miller-Saunders

Watch our interview with Dr. Zhong about this discovery:

You can also watch or listen to interviews with Dr. Suttle and Dr. Zhong on CBC On the Coast, Global News, CKNW Jill Bennett Show, Fairchild TV (新時代電視), Cortes Currents. 

Read more about this discovery on Scienmag, Earth.com, National Fisherman, and Glacier Media (via North Shore News, Richmond News, Vancouver is Awesome, Pique NewsMagazine, Times Colonist, Squamish Chief, Business in Vancouver (BIV), Bowen Island Undercurrent, Powell River Peak, and Sechelt / Gibsons Coast Reporter).

Follow more news releases about this discovery here: Evolutionarily divergent nidovirus with an exceptionally large genome identified in Pacific oysters undergoing mass mortality

Read the UBC Science article here: Bacterial fingerprints in soil show where copper is buried

Copper is vital to various industries, including manufacturing, construction and transportation, and Canada holds nearly 900 million tonnes of copper. According to a recent study in Geology, researchers from UBC departments of Earth, Ocean and Atmospheric Sciences (EOAS), Microbiology and Immunology (MBIM), and Mineral Deposit Research Unit (MDRU) have developed a new technique to detect buried copper deposits using microbial DNA in the surface soil as ‘biological fingerprints’. 

The team introduced copper to soil microbes from two locations in Canada – tundra from the Northwest Territories and a known porphyry copper deposit in Deerhorn, B.C—and looked at shifts in microbial composition and abundance through DNA sequencing.

“We took those changed communities of microbes as indicators for the presence of copper—essentially a biological fingerprint made up of many individual species,” said first author and Ph.D. Candidate Bianca Iulianella Phillips. “We then analyzed the soil from Deerhorn, and found that from that fingerprint, 29 species of microbes are present above the mineral deposit. This demonstrates that there is a predictive capability with our technique, showing where copper deposits are buried.”

“Our approach offers a new dimension to mineral exploration—enhancing discovery success and helping reduce costs with more precise targeting,” said senior author Dr. Sean Crowe, professor in UBC EOAS and MBIM. “As the industry adopts this approach more broadly, not only will it become more cost-effective and accessible, but the increasing volume of data will also make the technique more robust, accelerating learning and refinement.”

Read about previous work of the team in detecting kimberlite, diamond-containing rocks: Biological fingerprints in soil show where diamond-containing ore is buried

Last week, researchers from the Pacific Centre for Isotopic and Geochemical Research (PCIGR) showcased their work at the Goldschmidt Conference, the premiere international meeting on geochemistry. 

This year’s conference featured a special session in honor of Dr. Dominique Weis (Director of PCIGR, Professor at UBC EOAS) and Dr. Catherine Chauvel (Research Director of the Institut de Physique du Globe de Paris) in recognition of their groundbreaking contributions to mantle geochemistry.

Dr. Weis was also interviewed by the European Association of Geochemistry during the event, where she reflected on receiving this honor and her insights on the future of mantle geochemistry. Read the blog here: What do we know about the composition of the mantle (Part 1)? An Interview with Dominique Weis

Ahead of the conference, PCIGR was invited by Targeted Films to produce a behind-the-scenes video highlighting the cutting-edge research and facilities at the center and in partnership with the Mineral Deposit Research Unit (MDRU) at UBC. Watch the video below and stay tuned for more content to come!

Read more here: 
PCIGR at Goldschmidt 2025!

Robert (Bob) Ellis, a long-time member of the Geophysics group in our Department, and its predecessors, passed away peacefully in the early morning of Sunday, June 22. He was 89. Bob received degrees in mathematics and physics from, first, the University of Western Ontario and then his PhD from the University of Alberta. He joined the (then) Department of Geophysics and Astronomy in 1966 and remained as Professor until his retirement in 2001. Bob’s research interests focused on earthquake and explosion seismology and their application to earthquake activity and the structure and evolution of the lithosphere, particularly in B.C. He mentored many graduate students who went on to successful careers in industry, academia and government service. 

Bob also contributed in a major way to the administration and collegiality of geophysical colleagues and other Earth science groups. In 1991, he became Head of Geophysics and Astronomy and effectively guided that department for the next 5 years. This was not an easy period as discussions concerning the creation of an amalgamated department (geology, oceanography and geophysics) took place throughout. On April 1, 1996 the new Department of Earth and Ocean Sciences was created from those groups while the astronomy group was joined with Physics. Bob was appointed Head of the new department. With perseverance and equanimity, he provided excellent leadership of the three groups, housed in four buildings, for 5 years until his retirement. Upon taking up this leadership role, Bob had this to say about the merger: “There has been a gradual convergence due to the complexity of problems in earth and ocean sciences, problems which can best be solved through close collaboration among experts from a number of sub-disciplines within the broad field. There is no doubt that it is the needs of the science and a contemporary teaching program in the science that has brought us together.” His statement is just as relevant today. 

On the personal side, Bob was quiet and thoughtful. He played a mean game of badminton and was a regular with a group of badminton players at UBC. He was also an avid cyclist. Bob and his loving wife, Wendy Drysdale, have literally cycled all over the world. Bob lived and worked a good life. 

For me, he was a wonderful mentor, colleague and friend. Thank you, Bob. 

…contributed by Ron Clowes, Emeritus Professor, EOAS

Bob at his retirement in 2001 

Bob in his cycling gear in 2016

Bob at the EOAS 25th Anniversary Gala